Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| arylsulfatase | DW035_00220 | Not Available | + | 58577 - 60133 | 57686.5 |
| arac family transcriptional regulator | DW035_00230 | Not Available | - | 63673 - 64566 | 34783.3 |
| rhamnulokinase | DW035_00235 | Not Available | + | 64729 - 66207 | 54441.3 |
| l-rhamnose isomerase | DW035_00240 | Not Available | + | 66214 - 67467 | 47630.7 |
| l-rhamnose/proton symporter rhat | DW035_00245 | Not Available | + | 67533 - 68543 | 36529.5 |
| rhamnulose-1-phosphate aldolase | DW035_00250 | Not Available | + | 68570 - 69379 | 30215.6 |
| lactaldehyde reductase | DW035_00255 | Not Available | + | 69412 - 70566 | 40840.9 |
| serine acetyltransferase | DW035_00260 | Not Available | - | 70787 - 71692 | 32867.4 |
| response regulator | DW035_00265 | Not Available | + | 71924 - 75940 | 154257.0 |
| tonb-dependent receptor | DW035_00270 | Not Available | + | 76214 - 79312 | 116045.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
