Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rok family transcriptional regulator | DW035_00170 | Not Available | + | 47627 - 48835 | 44450.1 |
| transcriptional regulator | DW035_00175 | Not Available | - | 48898 - 49107 | 7717.62 |
| hypothetical protein | DW035_00180 | Not Available | - | 49120 - 49356 | 9378.02 |
| duf2975 domain-containing protein | DW035_00185 | Not Available | - | 49371 - 50018 | 23859.8 |
| cpbp family intramembrane metalloprotease | DW035_00190 | Not Available | - | 50048 - 50881 | 30461.9 |
| duf3836 domain-containing protein | DW035_00195 | Not Available | - | 50907 - 51227 | 12179.6 |
| rna polymerase sigma-70 factor | DW035_00200 | Not Available | + | 51706 - 52302 | 23681.3 |
| fecr family protein | DW035_00205 | Not Available | + | 52369 - 53373 | 39102.7 |
| susc/raga family tonb-linked outer membrane protein | DW035_00210 | Not Available | + | 53604 - 56909 | 121291.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_00215 | Not Available | + | 56916 - 58556 | 62513.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
