Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sialate o-acetylesterase | DW035_00115 | Not Available | - | 31083 - 31745 | 25229.3 |
| beta-n-acetylhexosaminidase | DW035_00120 | Not Available | - | 31773 - 33782 | 78018.9 |
| alpha-l-fucosidase | DW035_00125 | Not Available | - | 33803 - 35281 | 57726.5 |
| susd family outer membrane lipoprotein nanu | DW035_00130 | Not Available | - | 35379 - 36938 | 58961.7 |
| sialidase | DW035_00140 | Not Available | - | 40660 - 42282 | 59922.8 |
| duf386 domain-containing protein | DW035_00145 | Not Available | - | 42298 - 42744 | 16819.2 |
| mfs transporter | DW035_00150 | Not Available | - | 42764 - 44002 | 44915.7 |
| n-acylglucosamine 2-epimerase | DW035_00155 | Not Available | - | 44041 - 45225 | 45884.9 |
| n-acetylneuraminate lyase | DW035_00160 | Not Available | - | 45236 - 46153 | 33852.0 |
| cyclically-permuted mutarotase family protein | DW035_00165 | Not Available | - | 46245 - 47327 | 39945.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
