Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | DW035_00070 | Not Available | - | 15670 - 16134 | 17254.5 |
| hypothetical protein | DW035_00075 | Not Available | - | 16110 - 17045 | 35632.9 |
| phosphoribosylamine--glycine ligase | DW035_00080 | Not Available | - | 17049 - 18323 | 45550.1 |
| s9 family peptidase | DW035_00085 | Not Available | - | 18348 - 20591 | 85010.2 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | + | 21173 - 21535 | Not Available |
| rna methyltransferase | DW035_00090 | Not Available | - | 20606 - 22126 | 58365.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_00095 | Not Available | - | 22266 - 24029 | 65988.8 |
| tonb-dependent receptor | DW035_00100 | Not Available | - | 24046 - 27252 | 118892.0 |
| is4 family transposase | DW035_00105 | Not Available | + | 27752 - 28915 | 45352.7 |
| sialate o-acetylesterase | DW035_00110 | Not Available | - | 29006 - 31081 | 78918.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
