Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_00015 | Not Available | + | 2404 - 2796 | 15107.9 |
| dihydrolipoyl dehydrogenase | DW035_00020 | Not Available | + | 2821 - 4161 | 48223.7 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DW035_00025 | Not Available | + | 4175 - 5590 | 52802.7 |
| gluconate 5-dehydrogenase | DW035_00030 | Not Available | + | 5796 - 6590 | 28099.0 |
| duf4861 domain-containing protein | DW035_00035 | Not Available | + | 6685 - 7920 | 45275.2 |
| polysaccharide deacetylase family protein | DW035_00040 | Not Available | - | 7988 - 8599 | 24393.6 |
| duf2723 domain-containing protein | DW035_00045 | Not Available | - | 8739 - 12071 | 126970.0 |
| abc transporter atp-binding protein | DW035_00050 | Not Available | - | 12183 - 12950 | 28683.9 |
| zinc abc transporter substrate-binding protein | DW035_00055 | Not Available | - | 12962 - 13831 | 32886.3 |
| sam-dependent methyltransferase | DW035_00060 | Not Available | - | 13903 - 14565 | 25155.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
