Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AF39-11
Accession NumberQROI00000000.1
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | DW035_01240 | Not Available | + | 304411 - 304851 | 17057.7 |
| hypothetical protein | DW035_01245 | Not Available | + | 304926 - 305288 | 13760.2 |
| Parb-like nuclease domain containing protein | DW035_01250 | Not Available | + | 305290 - 306408 | 43141.9 |
| hypothetical protein | DW035_01255 | Not Available | + | 306386 - 306997 | 22095.4 |
| hypothetical protein | DW035_01260 | Not Available | + | 307034 - 307273 | 9455.78 |
| hypothetical protein | DW035_01265 | Not Available | + | 307377 - 307844 | 17616.2 |
| Terminase large subunit | DW035_01270 | Not Available | + | 307831 - 309258 | 54963.6 |
| Phage portal protein | DW035_01275 | Not Available | + | 309270 - 310694 | 54724.4 |
| l-aspartate oxidase | DW035_00005 | Not Available | - | 190 - 1776 | 59225.0 |
| hypothetical protein | DW035_00010 | Not Available | + | 1882 - 2376 | 19730.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
