Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4858 domain-containing protein | DW048_05915 | Not Available | Positive | 1327808 - 1328371 | 21541.2 |
| exopolygalacturonase | DW048_05920 | Not Available | Negative | 1328523 - 1329827 | 49100.8 |
| glycoside hydrolase family 28 protein | DW048_05930 | Not Available | Negative | 1333025 - 1334809 | 66031.2 |
| hypothetical protein | DW048_05935 | Not Available | Positive | 1335021 - 1335716 | 26655.1 |
| fic family protein | DW048_05940 | Not Available | Negative | 1335905 - 1336906 | 38150.0 |
| arylsulfatase | DW048_05955 | Not Available | Negative | 1340374 - 1341789 | 53055.1 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_05960 | Not Available | Negative | 1341807 - 1343432 | 61301.7 |
| susc/raga family tonb-linked outer membrane protein | DW048_05965 | Not Available | Negative | 1343445 - 1346810 | 124322.0 |
| fecr family protein | DW048_05970 | Not Available | Negative | 1347063 - 1348076 | 38548.0 |
| rna polymerase sigma-70 factor | DW048_05975 | Not Available | Positive | 1348220 - 1348786 | 22251.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

