Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW048_05655 | Not Available | Positive | 1268319 - 1270637 | 86968.6 |
| duf4980 domain-containing protein | DW048_05660 | Not Available | Positive | 1270786 - 1272669 | 70979.4 |
| mfs transporter | DW048_05665 | Not Available | Positive | 1272685 - 1273845 | 41844.0 |
| carbohydrate kinase | DW048_05670 | Not Available | Positive | 1273873 - 1274760 | 32432.2 |
| response regulator | DW048_05675 | Not Available | Positive | 1274956 - 1277682 | 102936.0 |
| amino acid-binding protein | DW048_05680 | Not Available | Negative | 1277725 - 1278153 | 15643.0 |
| phenylacetate--coa ligase | DW048_05685 | Not Available | Negative | 1278165 - 1279463 | 49214.5 |
| duf3256 family protein | DW048_05690 | Not Available | Positive | 1279577 - 1280224 | 24349.6 |
| 50s ribosomal protein l31 type b | DW048_05695 | Not Available | Negative | 1280309 - 1280563 | 9656.59 |
| class ii fructose-1,6-bisphosphate aldolase | DW048_05700 | Not Available | Positive | 1280895 - 1281899 | 36460.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

