Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DW048_05455 | Not Available | Positive | 1230957 - 1231322 | 14356.3 |
| mate family efflux transporter | DW048_05465 | Not Available | Positive | 1233075 - 1234424 | 49665.5 |
| adenylosuccinate lyase | DW048_05470 | Not Available | Positive | 1234518 - 1235864 | 50932.1 |
| asparagine--trna ligase | DW048_05480 | Not Available | Positive | 1237425 - 1238828 | 53448.1 |
| duf4488 domain-containing protein | DW048_05485 | Not Available | Positive | 1238991 - 1239485 | 18600.8 |
| zeta toxin | DW048_05490 | Not Available | Positive | 1239846 - 1240421 | 21483.9 |
| hypothetical protein | DW048_05495 | Not Available | Positive | 1240411 - 1240656 | 9041.7 |
| 50s ribosomal protein l13 | DW048_05500 | Not Available | Positive | 1240956 - 1241417 | 17129.7 |
| 30s ribosomal protein s9 | DW048_05505 | Not Available | Positive | 1241424 - 1241810 | 14527.7 |
| 30s ribosomal protein s2 | DW048_05510 | Not Available | Positive | 1241943 - 1242782 | 30564.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

