Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc ribbon domain-containing protein | DW048_05340 | Not Available | Negative | 1204570 - 1205532 | 36768.0 |
| collagenase-like protease | DW048_05345 | Not Available | Negative | 1205519 - 1207348 | 69884.0 |
| homoserine o-succinyltransferase | DW048_05350 | Not Available | Negative | 1207345 - 1208262 | 35760.9 |
| gfo/idh/moca family oxidoreductase | DW048_05355 | Not Available | Positive | 1208644 - 1210206 | 58101.8 |
| nitroreductase family protein | DW048_05365 | Not Available | Negative | 1210574 - 1211302 | 27942.3 |
| type 1 glutamine amidotransferase domain-containing protein | DW048_05370 | Not Available | Negative | 1211324 - 1212019 | 25803.2 |
| tolc family protein | DW048_05375 | Not Available | Negative | 1212160 - 1213329 | 43862.6 |
| cusa/czca family heavy metal efflux rnd transporter | DW048_05380 | Not Available | Negative | 1213340 - 1216423 | 112422.0 |
| hypothetical protein | DW048_05390 | Not Available | Negative | 1217788 - 1218291 | 19121.3 |
| abc transporter atp-binding protein | DW048_05400 | Not Available | Negative | 1220382 - 1222325 | 73583.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

