Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin family protein | DW048_05165 | Not Available | Negative | 1160668 - 1161522 | 32964.4 |
| aminopeptidase | DW048_05175 | Not Available | Positive | 1163267 - 1164478 | 45970.4 |
| single-stranded-dna-specific exonuclease recj | DW048_05180 | Not Available | Positive | 1164592 - 1166364 | 66577.5 |
| recq family atp-dependent dna helicase | DW048_05185 | Not Available | Positive | 1166482 - 1168377 | 72894.9 |
| o-glcnacase | DW048_05190 | Not Available | Positive | 1168424 - 1170637 | 84957.3 |
| tetratricopeptide repeat protein | DW048_05195 | Not Available | Positive | 1170652 - 1171602 | 35751.7 |
| pyridoxal phosphate-dependent aminotransferase | DW048_05205 | Not Available | Negative | 1172663 - 1173838 | 44742.1 |
| protease | DW048_05210 | Not Available | Negative | 1173907 - 1174437 | 18956.9 |
| transcriptional regulator | DW048_05215 | Not Available | Positive | 1174627 - 1174983 | 13384.4 |
| prephenate dehydratase | DW048_05220 | Not Available | Positive | 1175241 - 1176083 | 31728.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

