Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | DW048_04940 | Not Available | Positive | 1117531 - 1118994 | 54241.6 |
| methyltransferase | DW048_04945 | Not Available | Positive | 1119010 - 1119648 | 24383.5 |
| 30s ribosome-binding factor rbfa | DW048_04950 | Not Available | Positive | 1119722 - 1120057 | 12972.9 |
| abc transporter permease | DW048_04955 | Not Available | Positive | 1120067 - 1121305 | 45706.0 |
| pyridoxamine kinase | DW048_04960 | Not Available | Negative | 1121692 - 1122564 | 32647.3 |
| glutamate racemase | DW048_04965 | Not Available | Negative | 1122621 - 1123466 | 31392.0 |
| omph family outer membrane protein | DW048_04970 | Not Available | Negative | 1123569 - 1124072 | 19260.2 |
| omph family outer membrane protein | DW048_04975 | Not Available | Negative | 1124130 - 1124645 | 18967.6 |
| outer membrane protein assembly factor bama | DW048_04980 | Not Available | Negative | 1124666 - 1127308 | 100747.0 |
| isoprenyl transferase | DW048_04985 | Not Available | Negative | 1127320 - 1128051 | 28066.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

