Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DW048_04870 | Not Available | Negative | 1099684 - 1100799 | 42910.4 |
| licd family protein | DW048_04880 | Not Available | Negative | 1101801 - 1102598 | 31703.4 |
| nad/nadp octopine/nopaline dehydrogenase | DW048_04885 | Not Available | Negative | 1102602 - 1103702 | 41186.0 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW048_04890 | Not Available | Negative | 1103699 - 1105504 | 70256.4 |
| glycosyl transferase | DW048_04895 | Not Available | Positive | 1105595 - 1106425 | 31859.6 |
| acyltransferase | DW048_04900 | Not Available | Negative | 1106448 - 1107473 | 39460.2 |
| lipopolysaccharide biosynthesis protein | DW048_04905 | Not Available | Negative | 1107473 - 1108909 | 53603.5 |
| methionine--trna ligase | DW048_04910 | Not Available | Negative | 1108991 - 1111033 | 77707.8 |
| tetratricopeptide repeat protein | DW048_04925 | Not Available | Negative | 1114251 - 1115927 | 60893.8 |
| site-specific tyrosine recombinase xerd | DW048_04930 | Not Available | Negative | 1116069 - 1117010 | 36180.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

