Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate synthase | DW048_03085 | Not Available | Negative | 740743 - 741951 | 45126.7 |
| n-acetyltransferase | DW048_03090 | Not Available | Negative | 742066 - 742623 | 20661.0 |
| arginine repressor | DW048_03095 | Not Available | Negative | 742646 - 743122 | 17529.3 |
| rhamnulokinase | DW048_03100 | Not Available | Positive | 743429 - 744907 | 55006.8 |
| l-rhamnose/proton symporter rhat | DW048_03110 | Not Available | Positive | 746295 - 747314 | 36101.1 |
| rhamnulose-1-phosphate aldolase | DW048_03115 | Not Available | Positive | 747400 - 748209 | 30253.7 |
| duf4251 domain-containing protein | DW048_03120 | Not Available | Positive | 748418 - 748915 | 18511.1 |
| right-handed parallel beta-helix repeat-containing protein | DW048_03125 | Not Available | Negative | 749021 - 750535 | 55846.1 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_03130 | Not Available | Negative | 750704 - 752323 | 59890.2 |
| tonb-dependent receptor | DW048_03135 | Not Available | Negative | 752335 - 755406 | 114433.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

