Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | DW048_02740 | Not Available | Negative | 620561 - 623002 | 94239.0 |
| hypothetical protein | DW048_02745 | Not Available | Negative | 623109 - 623843 | 27039.4 |
| pectin esterase | DW048_02755 | Not Available | Negative | 628633 - 630357 | 63984.5 |
| hypothetical protein | DW048_02760 | Not Available | Negative | 630364 - 631524 | 43449.3 |
| pectate lyase | DW048_02765 | Not Available | Negative | 631545 - 633158 | 61375.3 |
| cupin domain-containing protein | DW048_02770 | Not Available | Positive | 633347 - 633838 | 18182.0 |
| hypothetical protein | DW048_02775 | Not Available | Negative | 633932 - 635932 | 75137.6 |
| glycoside hydrolase family 2 | DW048_02785 | Not Available | Negative | 638347 - 641715 | 126919.0 |
| duf5060 domain-containing protein | DW048_02795 | Not Available | Negative | 644483 - 646090 | 61886.5 |
| xylan 1,4-beta-xylosidase | DW048_02800 | Not Available | Negative | 646128 - 647624 | 56368.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

