Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i pullulanase | DW048_02445 | Not Available | Positive | 546753 - 548747 | 74697.4 |
| mannonate dehydratase | DW048_02450 | Not Available | Positive | 548805 - 549983 | 44763.9 |
| patatin | DW048_02455 | Not Available | Negative | 549966 - 552176 | 81953.5 |
| exonuclease | DW048_02460 | Not Available | Positive | 552384 - 552872 | 18589.9 |
| porin | DW048_02470 | Not Available | Positive | 553698 - 554711 | 38665.0 |
| excinuclease abc subunit uvrb | DW048_02475 | Not Available | Negative | 554879 - 556912 | 77685.6 |
| outer membrane protein assembly factor bamd | DW048_02480 | Not Available | Positive | 557078 - 557914 | 32450.3 |
| rna polymerase rpb6 | DW048_02485 | Not Available | Positive | 557931 - 558266 | 12965.3 |
| duf4293 family protein | DW048_02490 | Not Available | Positive | 558516 - 558968 | 16883.5 |
| port family protein | DW048_02495 | Not Available | Negative | 559051 - 559734 | 25699.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

