Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | DW048_02030 | Not Available | Negative | 462562 - 462798 | 8382.75 |
| phosphoribosylglycinamide formyltransferase | DW048_02035 | Not Available | Positive | 462951 - 463529 | 21386.1 |
| rna polymerase sigma-70 factor | DW048_02040 | Not Available | Negative | 463501 - 464049 | 21560.2 |
| is1380-like element is612 family transposase | DW048_02045 | Not Available | Negative | 464376 - 464995 | 24389.4 |
| hypothetical protein | DW048_02050 | Not Available | Positive | 464996 - 465375 | 13950.7 |
| n-acetylmuramoyl-l-alanine amidase | DW048_02055 | Not Available | Negative | 465634 - 466152 | 19565.6 |
| dna-binding protein | DW048_02060 | Not Available | Negative | 466544 - 467038 | 18040.5 |
| hypothetical protein | DW048_02065 | Not Available | Negative | 467078 - 467308 | 8470.18 |
| duf4248 domain-containing protein | DW048_02070 | Not Available | Negative | 467404 - 467598 | 7367.08 |
| virulence protein e | DW048_02080 | Not Available | Negative | 469865 - 470521 | 24700.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

