Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate dehydrogenase electron transfer subunit | DW048_21960 | Not Available | Positive | 5052668 - 5053447 | 28483.2 |
| dihydroorotate dehydrogenase | DW048_21965 | Not Available | Positive | 5053435 - 5054346 | 32335.4 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DW048_21970 | Not Available | Negative | 5054712 - 5055386 | 25423.7 |
| dna ligase (nad(+)) liga | DW048_21975 | Not Available | Positive | 5055485 - 5057482 | 75175.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | DW048_21980 | Not Available | Positive | 5057584 - 5058477 | 32789.2 |
| transposase family protein | DW048_21985 | Not Available | Positive | 5058807 - 5059024 | 8495.12 |
| hypothetical protein | DW048_21995 | Not Available | Negative | 5062272 - 5062451 | 6685.06 |
| duf1896 domain-containing protein | DW048_22000 | Not Available | Negative | 5062441 - 5062884 | 16924.8 |
| duf3945 domain-containing protein | DW048_22005 | Not Available | Negative | 5062989 - 5064284 | 48883.6 |
| duf3791 domain-containing protein | DW048_22015 | Not Available | Positive | 5066330 - 5066779 | 17822.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

