Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 29 | DW048_21360 | Not Available | Positive | 4919433 - 4921316 | 70601.0 |
| dna-protecting protein dpra | DW048_21365 | Not Available | Negative | 4921397 - 4922512 | 41023.5 |
| acyl-coa thioesterase | DW048_21370 | Not Available | Negative | 4922509 - 4922916 | 15657.8 |
| pp_04218 | DW048_21375 | Not Available | Positive | 4922975 - 4923892 | Not Available |
| duf4595 domain-containing protein | DW048_21390 | Not Available | Negative | 4925314 - 4926096 | 29828.2 |
| hypothetical protein | DW048_21395 | Not Available | Negative | 4926147 - 4926929 | 31248.7 |
| site-specific integrase | DW048_21400 | Not Available | Negative | 4927615 - 4928202 | 22527.7 |
| tonb-dependent receptor | DW048_21405 | Not Available | Positive | 4928526 - 4930844 | 88724.1 |
| quinolinate synthase nada | DW048_21410 | Not Available | Positive | 4930947 - 4931939 | 36608.0 |
| non-canonical purine ntp diphosphatase | DW048_21415 | Not Available | Negative | 4932194 - 4932775 | 21352.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

