Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 2-thiouridine(34) synthase mnma | DW048_21110 | Not Available | Negative | 4861536 - 4862663 | 42806.4 |
| 4fe-4s dicluster domain-containing protein | DW048_21115 | Not Available | Negative | 4862663 - 4863442 | 28476.2 |
| 2-isopropylmalate synthase | DW048_21120 | Not Available | Positive | 4864265 - 4865761 | 54450.0 |
| 3-isopropylmalate dehydratase large subunit | DW048_21125 | Not Available | Positive | 4865779 - 4867161 | 50049.1 |
| 3-isopropylmalate dehydratase small subunit | DW048_21130 | Not Available | Positive | 4867175 - 4867771 | 22407.5 |
| 2-isopropylmalate synthase | DW048_21135 | Not Available | Positive | 4867777 - 4869297 | 56836.2 |
| 3-isopropylmalate dehydrogenase | DW048_21140 | Not Available | Positive | 4869390 - 4870451 | 39120.9 |
| ahpc/tsa family protein | DW048_21145 | Not Available | Positive | 4870583 - 4871728 | 42891.5 |
| peptide-methionine (s)-s-oxide reductase | DW048_21150 | Not Available | Negative | 4871797 - 4872282 | 18625.0 |
| tetratricopeptide repeat protein | DW048_21155 | Not Available | Positive | 4872400 - 4873254 | 32582.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

