Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide export protein | DW048_20905 | Not Available | Positive | 4816300 - 4817091 | 28988.3 |
| n-acetylmuramoyl-l-alanine amidase | DW048_20915 | Not Available | Negative | 4819618 - 4820067 | 16921.3 |
| duf4248 domain-containing protein | DW048_20925 | Not Available | Positive | 4820884 - 4821114 | 8949.8 |
| hypothetical protein | DW048_20935 | Not Available | Negative | 4823840 - 4824037 | 7987.94 |
| upxy family transcription antiterminator | DW048_20940 | Not Available | Positive | 4824315 - 4824815 | 18977.6 |
| nucleotidyltransferase domain-containing protein | DW048_20945 | Not Available | Positive | 4824883 - 4825173 | 10799.2 |
| hypothetical protein | DW048_20950 | Not Available | Positive | 4825701 - 4827218 | 56721.3 |
| is1182 family transposase | DW048_20955 | Not Available | Positive | 4827345 - 4827946 | 23991.2 |
| rlua family pseudouridine synthase | DW048_20960 | Not Available | Negative | 4828084 - 4829706 | 62162.8 |
| hypothetical protein | DW048_20970 | Not Available | Positive | 4830255 - 4830461 | 7806.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

