Phocaeicola vulgatus strain AF41-8MH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF41-8MH is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolic requirements and mesophilic temperature range. This strain is non-motile, existing primarily as single cells rather than in clusters or chains. It possesses flagella, which may play a role in its life cycle or interaction with the environment, despite its lack of mobility. As a member of the host-associated microbiota, P. vulgatus strain AF41-8MH is free-living but is notably associated with Homo sapiens, indicating its potential role in the human microbiome. Its biotic relationship suggests that it may contribute to the complex ecosystem of microbes that inhabit human hosts, possibly influencing health and disease processes. The strain contains one replicon and features a unique two-membrane structure, typical of Gram-positive bacteria, which may affect its interaction with host tissues and its ability to thrive in anaerobic environments. The accession number for this strain is QRNW00000000.1, providing a reference for further genetic and functional studies. Understanding the traits of Phocaeicola vulgatus strain AF41-8MH can offer insights into its ecological role in the human gut microbiome and its potential implications for human health. Its anaerobic nature and presence in human hosts suggest that it may participate in metabolic processes that are essential for maintaining gut health, further emphasizing the importance of studying gut-associated microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF41-8MH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF41-8MH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fimbrillin family proteinDW048_20755Not AvailablePositive4783665 - 478466037301.4
hypothetical proteinDW048_20760Not AvailablePositive4784657 - 478597347507.9
hypothetical proteinDW048_20785Not AvailableNegative4791611 - 47918388306.03
site-specific integraseDW048_20790Not AvailableNegative4791856 - 479308847008.0
dead/deah box helicaseDW048_20795Not AvailableNegative4793385 - 479468948294.5
endonuclease/exonuclease/phosphatase family proteinDW048_20815Not AvailableNegative4798132 - 479907034990.7
cysteine synthase aDW048_20820Not AvailablePositive4799216 - 480016633551.6
trna 2-thiouridine(34) synthase mnmaDW048_20825Not AvailablePositive4800173 - 480123739768.7
dna-binding response regulatorDW048_20830Not AvailableNegative4801234 - 480188424599.1
Trna-valNot AvailableNot AvailablePositive4801953 - 4802030Not Available

Displaying genes 3341 – 3350 of 3755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.