Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DW048_20370 | Not Available | Positive | 4678117 - 4678836 | 27382.5 |
| serine hydroxymethyltransferase | DW048_20375 | Not Available | Positive | 4679083 - 4680363 | 46829.6 |
| mate family efflux transporter | DW048_20380 | Not Available | Positive | 4680562 - 4681905 | 49290.3 |
| ompa family protein | DW048_20385 | Not Available | Positive | 4681954 - 4682673 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DW048_20390 | Not Available | Positive | 4682802 - 4683524 | 27910.3 |
| duf1460 domain-containing protein | DW048_20395 | Not Available | Negative | 4683496 - 4684380 | 33269.5 |
| biotin/lipoyl-binding protein | DW048_20400 | Not Available | Negative | 4684503 - 4686278 | 66738.8 |
| rna polymerase sigma factor | DW048_20405 | Not Available | Negative | 4686468 - 4686971 | 19667.6 |
| trimeric intracellular cation channel family protein | DW048_20410 | Not Available | Negative | 4687130 - 4687744 | 22186.8 |
| duf3078 domain-containing protein | DW048_20420 | Not Available | Negative | 4689015 - 4690409 | 53456.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

