Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW048_20310 | Not Available | Negative | 4666602 - 4667276 | 24792.2 |
| phoh family protein | DW048_20315 | Not Available | Positive | 4667431 - 4668435 | 37699.4 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DW048_20320 | Not Available | Positive | 4668456 - 4669400 | 35928.2 |
| demethylmenaquinone methyltransferase | DW048_20325 | Not Available | Positive | 4669493 - 4670230 | 27936.8 |
| shikimate dehydrogenase | DW048_20330 | Not Available | Positive | 4670249 - 4670989 | 27732.7 |
| tpm domain-containing protein | DW048_20340 | Not Available | Positive | 4671951 - 4672862 | 32992.4 |
| lema family protein | DW048_20345 | Not Available | Positive | 4672899 - 4673480 | 21752.9 |
| penicillin-binding protein | DW048_20350 | Not Available | Negative | 4673623 - 4675938 | 88055.9 |
| aspartate carbamoyltransferase | DW048_20355 | Not Available | Positive | 4676098 - 4677039 | 36259.7 |
| flavin reductase family protein | DW048_20365 | Not Available | Positive | 4677520 - 4678107 | 21914.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

