Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW048_19815 | Not Available | Positive | 4567532 - 4568188 | 25847.1 |
| nudix domain-containing protein | DW048_19820 | Not Available | Positive | 4568139 - 4569029 | 34255.0 |
| nad-dependent epimerase/dehydratase family protein | DW048_19825 | Not Available | Positive | 4569037 - 4569879 | 31360.1 |
| m20/m25/m40 family metallo-hydrolase | DW048_19835 | Not Available | Negative | 4570319 - 4571383 | 39122.8 |
| long-chain fatty acid--coa ligase | DW048_19840 | Not Available | Positive | 4571597 - 4573402 | 68354.2 |
| peptide chain release factor 2 | DW048_19845 | Not Available | Positive | 4573460 - 4574575 | 42519.2 |
| cyth domain-containing protein | DW048_19850 | Not Available | Positive | 4574870 - 4575340 | 18287.6 |
| rna polymerase sigma factor | DW048_19860 | Not Available | Positive | 4578072 - 4578575 | 19779.6 |
| hypothetical protein | DW048_19865 | Not Available | Negative | 4578656 - 4579042 | 14804.4 |
| sodium-dependent transporter | DW048_19870 | Not Available | Positive | 4579138 - 4580502 | 49193.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

