Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW048_19670 | Not Available | Negative | 4518176 - 4519468 | 47619.7 |
| abc transporter atp-binding protein | DW048_19675 | Not Available | Negative | 4519512 - 4520177 | 24550.0 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW048_19680 | Not Available | Negative | 4520546 - 4521793 | 46548.9 |
| transposase | DW048_19685 | Not Available | Positive | 4521897 - 4521970 | 2806.53 |
| rlua family pseudouridine synthase | DW048_19690 | Not Available | Negative | 4522871 - 4523797 | 35718.2 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DW048_19695 | Not Available | Negative | 4523842 - 4525263 | 54044.3 |
| transposase | DW048_19705 | Not Available | Positive | 4528444 - 4529925 | 57693.4 |
| hypothetical protein | DW048_19710 | Not Available | Negative | 4530294 - 4530545 | 9732.68 |
| hypothetical protein | DW048_19725 | Not Available | Positive | 4531515 - 4532594 | 39840.0 |
| rna polymerase sigma-70 factor | DW048_19735 | Not Available | Positive | 4543312 - 4543902 | 23832.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

