Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DW048_01665 | Not Available | Positive | 353705 - 354301 | 22547.5 |
| hypothetical protein | DW048_01670 | Not Available | Positive | 354309 - 354911 | 22905.9 |
| glycine c-acetyltransferase | DW048_01675 | Not Available | Negative | 355275 - 356465 | 43568.4 |
| nad-dependent epimerase/dehydratase family protein | DW048_01680 | Not Available | Positive | 356636 - 357589 | 35269.3 |
| protein translocase subunit secdf | DW048_01690 | Not Available | Negative | 359061 - 362048 | 109234.0 |
| m3 family peptidase | DW048_01695 | Not Available | Negative | 362227 - 364314 | 78974.4 |
| endonuclease | DW048_01700 | Not Available | Negative | 364341 - 365420 | 40277.9 |
| rhomboid family intramembrane serine protease | DW048_01705 | Not Available | Negative | 365424 - 366317 | 33946.6 |
| hu family dna-binding protein | DW048_01715 | Not Available | Positive | 367185 - 367457 | 9278.25 |
| dna-binding protein | DW048_01725 | Not Available | Positive | 371050 - 371520 | 18238.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

