Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW048_19020 | Not Available | Negative | 4357502 - 4357951 | 17607.4 |
| amp nucleosidase | DW048_19025 | Not Available | Positive | 4358009 - 4358785 | 29142.2 |
| dna polymerase iii subunit delta | DW048_19030 | Not Available | Positive | 4358797 - 4359813 | 38857.2 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_19040 | Not Available | Positive | 4364110 - 4366413 | 86387.3 |
| oligogalacturonide lyase | DW048_19045 | Not Available | Positive | 4366634 - 4367959 | 49946.5 |
| duf4976 domain-containing protein | DW048_19050 | Not Available | Positive | 4368029 - 4369366 | 49578.7 |
| glycoside hydrolase family 2 protein | DW048_19055 | Not Available | Positive | 4369380 - 4372235 | 106522.0 |
| rhamnogalacturonan acetylesterase | DW048_19070 | Not Available | Positive | 4377628 - 4379184 | 57952.4 |
| hypothetical protein | DW048_19075 | Not Available | Positive | 4379206 - 4382505 | 124963.0 |
| aaa family atpase | DW048_19080 | Not Available | Negative | 4382643 - 4384193 | 60780.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

