Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW048_18145 | Not Available | Positive | 4169039 - 4170133 | 42365.0 |
| is4 family transposase | DW048_18150 | Not Available | Negative | 4170123 - 4171286 | 45928.3 |
| plasmid mobilization relaxosome protein mobc | DW048_18155 | Not Available | Positive | 4171609 - 4172013 | 15058.6 |
| mobilization protein | DW048_18160 | Not Available | Positive | 4172018 - 4172938 | 34925.8 |
| hypothetical protein | DW048_18165 | Not Available | Positive | 4172969 - 4173724 | 28176.6 |
| site-specific integrase | DW048_18170 | Not Available | Positive | 4173885 - 4175099 | 46399.4 |
| upxy family transcription antiterminator | DW048_18175 | Not Available | Positive | 4175677 - 4176195 | 20127.8 |
| hypothetical protein | DW048_18180 | Not Available | Positive | 4176634 - 4177068 | 16620.7 |
| polysaccharide export protein | DW048_18185 | Not Available | Positive | 4177094 - 4177894 | 29352.7 |
| tyrosine protein kinase | DW048_18190 | Not Available | Positive | 4177932 - 4180343 | 89940.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

