Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siderophore biosynthesis protein | DW048_16435 | Not Available | Negative | 3775180 - 3775806 | 24533.4 |
| gliding motility-associated protein glde | DW048_16440 | Not Available | Negative | 3775815 - 3777167 | 50847.5 |
| single-stranded dna-binding protein | DW048_16445 | Not Available | Negative | 3777204 - 3777671 | 17347.4 |
| a/g-specific adenine glycosylase | DW048_16450 | Not Available | Negative | 3777686 - 3778744 | 40554.6 |
| integration host factor subunit beta | DW048_16455 | Not Available | Positive | 3778924 - 3779199 | 10172.4 |
| ribonuclease e/g | DW048_16460 | Not Available | Positive | 3779438 - 3781012 | 59689.8 |
| n-acetylmuramoyl-l-alanine amidase | DW048_16465 | Not Available | Negative | 3781184 - 3781990 | 30760.1 |
| tlpa family protein disulfide reductase | DW048_16470 | Not Available | Negative | 3781997 - 3782539 | 20320.1 |
| hypothetical protein | DW048_16475 | Not Available | Positive | 3782771 - 3783379 | 23096.2 |
| lysine--trna ligase | DW048_16480 | Not Available | Positive | 3783454 - 3785184 | 66521.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

