Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DW048_01345 | Not Available | Positive | 284376 - 286019 | 59907.0 |
| glycoside hydrolase family 25 protein | DW048_01350 | Not Available | Positive | 286145 - 287011 | 33910.9 |
| yccf domain-containing protein | DW048_01355 | Not Available | Positive | 287057 - 287425 | 13206.2 |
| thioredoxin | DW048_01365 | Not Available | Negative | 288502 - 288762 | 10400.5 |
| helicase | DW048_01370 | Not Available | Negative | 288992 - 291082 | 81463.1 |
| dna-binding protein | DW048_01380 | Not Available | Positive | 291488 - 292111 | 23855.7 |
| hypothetical protein | DW048_01385 | Not Available | Positive | 292485 - 293885 | 52388.5 |
| duf4421 domain-containing protein | DW048_01395 | Not Available | Negative | 295571 - 296698 | 43092.1 |
| gfo/idh/moca family oxidoreductase | DW048_01400 | Not Available | Negative | 296708 - 297697 | 36847.1 |
| glutamine abc transporter substrate-binding protein | DW048_01405 | Not Available | Negative | 297786 - 298604 | 30961.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

