Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucanase | DW048_15720 | Not Available | Negative | 3599116 - 3600252 | 42262.9 |
| glycoside hydrolase family 16 protein | DW048_15725 | Not Available | Negative | 3600264 - 3601112 | 33017.1 |
| carbohydrate-binding protein | DW048_15730 | Not Available | Negative | 3601239 - 3602129 | 33030.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_15735 | Not Available | Negative | 3602164 - 3603849 | 64588.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_15745 | Not Available | Negative | 3606927 - 3608819 | 72415.0 |
| tonb-dependent receptor | DW048_15750 | Not Available | Negative | 3608834 - 3611962 | 116750.0 |
| transposase | DW048_15755 | Not Available | Positive | 3612146 - 3612219 | 2806.53 |
| Trna-met | Not Available | Not Available | Positive | 3612406 - 3612481 | Not Available |
| tetr/acrr family transcriptional regulator | DW048_15765 | Not Available | Positive | 3612713 - 3613312 | 22662.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DW048_15770 | Not Available | Positive | 3613344 - 3614090 | 25964.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

