Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-arabinofuranosidase | DW048_15665 | Not Available | Negative | 3576767 - 3579265 | 92483.5 |
| glycoside hydrolase | DW048_15670 | Not Available | Negative | 3579293 - 3581236 | 73205.7 |
| beta-glycosidase | DW048_15675 | Not Available | Negative | 3581430 - 3582938 | 57900.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_15680 | Not Available | Negative | 3583044 - 3584786 | 67438.7 |
| susc/raga family tonb-linked outer membrane protein | DW048_15685 | Not Available | Negative | 3584799 - 3588077 | 122483.0 |
| duf4974 domain-containing protein | DW048_15690 | Not Available | Negative | 3588228 - 3589172 | 36254.8 |
| rna polymerase sigma-70 factor | DW048_15695 | Not Available | Negative | 3589246 - 3589806 | 22126.4 |
| helicase | DW048_15700 | Not Available | Positive | 3590010 - 3592523 | 97180.2 |
| tonb-dependent receptor | DW048_15705 | Not Available | Positive | 3593034 - 3596105 | 113286.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_15710 | Not Available | Positive | 3596118 - 3597671 | 58400.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

