Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase subunit alpha | DW048_01280 | Not Available | Positive | 266318 - 267934 | 58773.4 |
| indolepyruvate oxidoreductase subunit beta | DW048_01285 | Not Available | Positive | 267931 - 268512 | 21245.8 |
| pyridoxal phosphate-dependent aminotransferase | DW048_01290 | Not Available | Positive | 268517 - 269824 | 48876.6 |
| phenylacetate--coa ligase | DW048_01295 | Not Available | Positive | 269931 - 271232 | 48582.5 |
| amino acid-binding protein | DW048_01300 | Not Available | Positive | 271246 - 271662 | 15370.7 |
| hypothetical protein | DW048_01320 | Not Available | Negative | 278148 - 278465 | 12244.6 |
| xanthan lyase | DW048_01325 | Not Available | Negative | 278556 - 281426 | 106963.0 |
| alpha-1,3-galactosidase b | DW048_01330 | Not Available | Positive | 281509 - 283326 | 68988.8 |
| acyltransferase | DW048_01335 | Not Available | Negative | 283409 - 283966 | 21350.4 |
| hypothetical protein | DW048_01340 | Not Available | Negative | 283977 - 284225 | 9206.38 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

