Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biosynthetic arginine decarboxylase | DW048_14290 | Not Available | Positive | 3243272 - 3245164 | 71492.0 |
| acetylglutamate kinase | DW048_14295 | Not Available | Positive | 3245169 - 3245942 | 27207.2 |
| hypothetical protein | DW048_14305 | Not Available | Positive | 3246504 - 3246983 | 18339.8 |
| tonb-dependent receptor | DW048_14310 | Not Available | Positive | 3247332 - 3250484 | 115357.0 |
| hypothetical protein | DW048_14320 | Not Available | Positive | 3252743 - 3253060 | 12163.9 |
| alpha-l-rhamnosidase | DW048_14330 | Not Available | Positive | 3253279 - 3255060 | 66677.3 |
| silent information regulator protein sir2 | DW048_14335 | Not Available | Positive | 3255104 - 3256954 | 69324.8 |
| glycoside hydrolase family 88 protein | DW048_14345 | Not Available | Positive | 3260495 - 3261628 | 43912.1 |
| beta-galactosidase | DW048_14350 | Not Available | Negative | 3261747 - 3263861 | 81045.3 |
| rhamnogalacturonan acetylesterase | DW048_14365 | Not Available | Positive | 3269290 - 3270564 | 47788.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

