Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside deaminase | DW048_14075 | Not Available | Positive | 3194910 - 3195377 | 16996.2 |
| aminoacyl-histidine dipeptidase | DW048_14080 | Not Available | Negative | 3195439 - 3196899 | 53173.6 |
| upf0104 family protein | DW048_14085 | Not Available | Negative | 3196896 - 3197900 | 37225.6 |
| ribosomal rna small subunit methyltransferase a | DW048_14090 | Not Available | Positive | 3197999 - 3198841 | 31940.9 |
| duf349 domain-containing protein | DW048_14100 | Not Available | Positive | 3200473 - 3202281 | 70097.0 |
| transposase | DW048_14105 | Not Available | Negative | 3202368 - 3202540 | 6522.78 |
| hypothetical protein | DW048_14110 | Not Available | Positive | 3202541 - 3202953 | 15975.2 |
| restriction endonuclease | DW048_14115 | Not Available | Negative | 3203000 - 3206383 | 130470.0 |
| snf2/rad54 family helicase | DW048_14120 | Not Available | Negative | 3206387 - 3209695 | 127756.0 |
| aaa family atpase | DW048_14125 | Not Available | Negative | 3209692 - 3211338 | 60806.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

