Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpx | DW048_13830 | Not Available | Negative | 3145428 - 3146678 | 46679.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DW048_13835 | Not Available | Negative | 3146802 - 3147473 | 24864.8 |
| trigger factor | DW048_13840 | Not Available | Negative | 3147654 - 3149009 | 51542.8 |
| rna-binding protein | DW048_13845 | Not Available | Positive | 3149392 - 3149637 | 9049.81 |
| lps export abc transporter atp-binding protein | DW048_13850 | Not Available | Negative | 3149712 - 3150533 | 31018.3 |
| abc transporter permease | DW048_13855 | Not Available | Positive | 3150662 - 3151405 | 27369.4 |
| abc transporter atp-binding protein | DW048_13860 | Not Available | Positive | 3151402 - 3152166 | 28911.9 |
| ribosome biogenesis gtpase der | DW048_13865 | Not Available | Negative | 3152244 - 3153557 | 49388.4 |
| gtpase era | DW048_13870 | Not Available | Negative | 3153591 - 3154472 | 33673.8 |
| ketoacyl-acp synthase iii | DW048_13875 | Not Available | Negative | 3154555 - 3155559 | 36862.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

