Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkyl hydroperoxide reductase subunit f | DW048_13485 | Not Available | Negative | 3055158 - 3056708 | 55958.4 |
| peroxiredoxin | DW048_13490 | Not Available | Negative | 3056721 - 3057287 | 21137.2 |
| hypothetical protein | DW048_13495 | Not Available | Negative | 3057555 - 3057743 | 7149.88 |
| pepsy domain-containing protein | DW048_13505 | Not Available | Negative | 3058810 - 3060006 | 45293.5 |
| dna-3-methyladenine glycosylase i | DW048_13520 | Not Available | Positive | 3064275 - 3064853 | 22180.6 |
| Trna-gly | Not Available | Not Available | Positive | 3065647 - 3065722 | Not Available |
| cobalamin biosynthesis protein cobd | DW048_13530 | Not Available | Negative | 3065758 - 3066690 | 34501.9 |
| pyridoxal phosphate-dependent class ii aminotransferase | DW048_13535 | Not Available | Negative | 3066672 - 3067682 | 38747.6 |
| cobyric acid synthase | DW048_13540 | Not Available | Negative | 3067675 - 3069165 | 55380.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DW048_13545 | Not Available | Negative | 3069165 - 3069740 | 22231.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

