Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW048_13315 | Not Available | Positive | 2989674 - 2992793 | 115348.0 |
| tonb-dependent receptor | DW048_13325 | Not Available | Positive | 2994497 - 2997544 | 112105.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_13330 | Not Available | Positive | 2997570 - 2999069 | 55427.3 |
| sialate o-acetylesterase | DW048_13350 | Not Available | Positive | 3008708 - 3010132 | 53434.0 |
| linear amide c-n hydrolase | DW048_13360 | Not Available | Positive | 3012589 - 3013668 | 39660.6 |
| Trna-lys | Not Available | Not Available | Positive | 3013839 - 3013911 | Not Available |
| atp-binding protein | DW048_13375 | Not Available | Positive | 3015826 - 3016614 | 29679.9 |
| 6-bladed beta-propeller | DW048_13380 | Not Available | Positive | 3017100 - 3017552 | 16991.1 |
| 6-bladed beta-propeller | DW048_13385 | Not Available | Positive | 3017494 - 3018258 | 29022.8 |
| transposase | DW048_13395 | Not Available | Positive | 3018584 - 3018657 | 2806.53 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

