Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW048_13250 | Not Available | Negative | 2971141 - 2972124 | 38253.4 |
| hypothetical protein | DW048_13255 | Not Available | Negative | 2972166 - 2973113 | 35960.7 |
| duf3868 domain-containing protein | DW048_13265 | Not Available | Negative | 2974705 - 2976114 | 54432.8 |
| duf3575 domain-containing protein | DW048_13270 | Not Available | Negative | 2976121 - 2976693 | 21521.9 |
| duf3868 domain-containing protein | DW048_13275 | Not Available | Negative | 2976697 - 2977791 | 40125.8 |
| duf3575 domain-containing protein | DW048_13280 | Not Available | Negative | 2977820 - 2978386 | 21274.4 |
| site-specific integrase | DW048_13285 | Not Available | Negative | 2978736 - 2979665 | 35869.5 |
| type ii toxin-antitoxin system rele/pare family toxin | DW048_13295 | Not Available | Positive | 2982711 - 2983052 | 13792.8 |
| xre family transcriptional regulator | DW048_13300 | Not Available | Positive | 2983024 - 2983326 | 11061.2 |
| beta-galactosidase | DW048_13305 | Not Available | Positive | 2983415 - 2987719 | 163283.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

