Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW048_12460 | Not Available | Positive | 2799511 - 2802549 | 110970.0 |
| duf4923 family protein | DW048_12470 | Not Available | Positive | 2804515 - 2805078 | 20065.2 |
| thioredoxin-dependent thiol peroxidase | DW048_12480 | Not Available | Negative | 2806207 - 2806653 | 16910.4 |
| saccharopine dehydrogenase family protein | DW048_12485 | Not Available | Negative | 2806721 - 2807914 | 44966.5 |
| hypothetical protein | DW048_12490 | Not Available | Negative | 2807998 - 2809251 | 47788.1 |
| meta domain-containing protein | DW048_12495 | Not Available | Positive | 2809376 - 2810167 | 28683.9 |
| molecular chaperone dnak | DW048_12500 | Not Available | Positive | 2810496 - 2812412 | 68358.2 |
| helix-turn-helix domain-containing protein | DW048_12505 | Not Available | Positive | 2812626 - 2813186 | 21709.8 |
| site-specific integrase | DW048_12510 | Not Available | Positive | 2813183 - 2814439 | 48208.5 |
| dna-binding protein | DW048_12515 | Not Available | Positive | 2814607 - 2815086 | 18530.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

