Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional repressor | DW048_12405 | Not Available | Positive | 2789285 - 2789695 | 15560.8 |
| nadh peroxidase | DW048_12410 | Not Available | Positive | 2789773 - 2790324 | 20566.4 |
| thioredoxin | DW048_12415 | Not Available | Negative | 2790428 - 2790886 | 17034.9 |
| thioredoxin | DW048_12420 | Not Available | Negative | 2790890 - 2791186 | 11303.9 |
| omph family outer membrane protein | DW048_12425 | Not Available | Negative | 2791305 - 2791919 | 23115.4 |
| hypothetical protein | DW048_12430 | Not Available | Negative | 2791942 - 2792169 | 8190.17 |
| endonuclease | DW048_12440 | Not Available | Positive | 2793852 - 2794862 | 38170.7 |
| ribosomal rna large subunit methyltransferase h | DW048_12445 | Not Available | Negative | 2794939 - 2795412 | 18383.5 |
| carboxylating nicotinate-nucleotide diphosphorylase | DW048_12450 | Not Available | Positive | 2795493 - 2796344 | 31226.1 |
| helix-turn-helix domain-containing protein | DW048_12455 | Not Available | Negative | 2796449 - 2799268 | 107484.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

