Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4847 domain-containing protein | DW048_11745 | Not Available | Positive | 2655535 - 2656029 | 18514.7 |
| cmp deaminase | DW048_11750 | Not Available | Positive | 2656034 - 2656468 | 16167.4 |
| s41 family peptidase | DW048_11755 | Not Available | Positive | 2656483 - 2658231 | 64897.7 |
| 5-formyltetrahydrofolate cyclo-ligase | DW048_11760 | Not Available | Positive | 2658155 - 2658685 | 20433.5 |
| duf721 domain-containing protein | DW048_11765 | Not Available | Negative | 2658851 - 2659141 | 11221.9 |
| dna replication/repair protein recf | DW048_11770 | Not Available | Negative | 2659138 - 2660253 | 42967.7 |
| hypothetical protein | DW048_11775 | Not Available | Positive | 2660406 - 2661083 | 24504.2 |
| 6,7-dimethyl-8-ribityllumazine synthase | DW048_11780 | Not Available | Positive | 2661176 - 2661682 | 18128.7 |
| Trna-tyr | Not Available | Not Available | Positive | 2661794 - 2661879 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 2661886 - 2661961 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

