Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent oxidoreductase | DW048_11325 | Not Available | Positive | 2548213 - 2549259 | 40078.3 |
| phosphatase pap2 family protein | DW048_11330 | Not Available | Positive | 2549250 - 2550227 | 37786.7 |
| duf2807 domain-containing protein | DW048_11335 | Not Available | Positive | 2550404 - 2551255 | 29119.2 |
| trna dihydrouridine synthase dusb | DW048_11340 | Not Available | Negative | 2551351 - 2552340 | 37212.5 |
| u32 family peptidase | DW048_11345 | Not Available | Positive | 2552491 - 2553753 | 47014.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_11350 | Not Available | Negative | 2554040 - 2555590 | 58655.7 |
| tonb-dependent receptor | DW048_11355 | Not Available | Negative | 2555606 - 2558692 | 114197.0 |
| transposase family protein | DW048_11360 | Not Available | Negative | 2558917 - 2559134 | 8495.12 |
| dna polymerase iv | DW048_11365 | Not Available | Positive | 2559338 - 2560432 | 41305.8 |
| adp-ribosylglycohydrolase | DW048_11370 | Not Available | Negative | 2560413 - 2561201 | 29873.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

