Phocaeicola vulgatus strain AF41-8MH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF41-8MH is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolic requirements and mesophilic temperature range. This strain is non-motile, existing primarily as single cells rather than in clusters or chains. It possesses flagella, which may play a role in its life cycle or interaction with the environment, despite its lack of mobility. As a member of the host-associated microbiota, P. vulgatus strain AF41-8MH is free-living but is notably associated with Homo sapiens, indicating its potential role in the human microbiome. Its biotic relationship suggests that it may contribute to the complex ecosystem of microbes that inhabit human hosts, possibly influencing health and disease processes. The strain contains one replicon and features a unique two-membrane structure, typical of Gram-positive bacteria, which may affect its interaction with host tissues and its ability to thrive in anaerobic environments. The accession number for this strain is QRNW00000000.1, providing a reference for further genetic and functional studies. Understanding the traits of Phocaeicola vulgatus strain AF41-8MH can offer insights into its ecological role in the human gut microbiome and its potential implications for human health. Its anaerobic nature and presence in human hosts suggest that it may participate in metabolic processes that are essential for maintaining gut health, further emphasizing the importance of studying gut-associated microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF41-8MH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF41-8MH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
orf6n domain-containing proteinDW048_11205Not AvailablePositive2517714 - 251827421549.0
hypothetical proteinDW048_11210Not AvailablePositive2518350 - 251876015494.5
hypothetical proteinDW048_11215Not AvailablePositive2518764 - 251917715716.4
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidaseDW048_11225Not AvailablePositive2520531 - 252193152304.6
gluconate 5-dehydrogenaseDW048_11235Not AvailablePositive2522979 - 252378228590.5
duf4861 domain-containing proteinDW048_11240Not AvailablePositive2523879 - 252505142906.5
polysaccharide deacetylase family proteinDW048_11245Not AvailableNegative2525109 - 252572024627.9
duf2723 domain-containing proteinDW048_11250Not AvailableNegative2525791 - 2529195129125.0
metal abc transporter atp-binding proteinDW048_11255Not AvailableNegative2529656 - 253042328714.7
zinc abc transporter substrate-binding proteinDW048_11260Not AvailableNegative2530433 - 253133834023.4

Displaying genes 1811 – 1820 of 3755 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.