Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| orf6n domain-containing protein | DW048_11205 | Not Available | Positive | 2517714 - 2518274 | 21549.0 |
| hypothetical protein | DW048_11210 | Not Available | Positive | 2518350 - 2518760 | 15494.5 |
| hypothetical protein | DW048_11215 | Not Available | Positive | 2518764 - 2519177 | 15716.4 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DW048_11225 | Not Available | Positive | 2520531 - 2521931 | 52304.6 |
| gluconate 5-dehydrogenase | DW048_11235 | Not Available | Positive | 2522979 - 2523782 | 28590.5 |
| duf4861 domain-containing protein | DW048_11240 | Not Available | Positive | 2523879 - 2525051 | 42906.5 |
| polysaccharide deacetylase family protein | DW048_11245 | Not Available | Negative | 2525109 - 2525720 | 24627.9 |
| duf2723 domain-containing protein | DW048_11250 | Not Available | Negative | 2525791 - 2529195 | 129125.0 |
| metal abc transporter atp-binding protein | DW048_11255 | Not Available | Negative | 2529656 - 2530423 | 28714.7 |
| zinc abc transporter substrate-binding protein | DW048_11260 | Not Available | Negative | 2530433 - 2531338 | 34023.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

