Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide lyase | DW048_10790 | Not Available | Negative | 2410941 - 2412623 | 61269.7 |
| duf3826 domain-containing protein | DW048_10795 | Not Available | Negative | 2412823 - 2413491 | 25071.4 |
| polysaccharide lyase | DW048_10800 | Not Available | Negative | 2413516 - 2415249 | 64377.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW048_10805 | Not Available | Negative | 2415418 - 2417427 | 75993.3 |
| sugar phosphate isomerase/epimerase | DW048_10815 | Not Available | Negative | 2420932 - 2421816 | 33288.8 |
| hybrid sensor histidine kinase/response regulator | DW048_10820 | Not Available | Negative | 2421982 - 2426385 | 168842.0 |
| hypothetical protein | DW048_10830 | Not Available | Positive | 2429209 - 2429433 | 8583.02 |
| abi family protein | DW048_10845 | Not Available | Positive | 2430398 - 2431360 | 37629.4 |
| hypothetical protein | DW048_10855 | Not Available | Positive | 2434144 - 2434692 | 21772.6 |
| duf1016 domain-containing protein | DW048_10860 | Not Available | Positive | 2434783 - 2435838 | 41125.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

