Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW048_09565 | Not Available | Positive | 2171626 - 2171862 | 9563.59 |
| hypothetical protein | DW048_09570 | Not Available | Positive | 2171876 - 2172124 | 9679.79 |
| hypothetical protein | DW048_09575 | Not Available | Positive | 2172099 - 2172605 | 19585.0 |
| hypothetical protein | DW048_09580 | Not Available | Positive | 2172872 - 2173381 | 18248.9 |
| type ii toxin-antitoxin system hipa family toxin | DW048_09590 | Not Available | Negative | 2173795 - 2175321 | 58020.2 |
| xre family transcriptional regulator | DW048_09595 | Not Available | Negative | 2175311 - 2175631 | 12315.2 |
| type ii toxin-antitoxin system hipa family toxin | DW048_09600 | Not Available | Negative | 2175731 - 2177320 | 60669.4 |
| helix-turn-helix domain-containing protein | DW048_09605 | Not Available | Negative | 2177313 - 2177663 | 13369.6 |
| atp-binding protein | DW048_09615 | Not Available | Positive | 2178079 - 2179359 | 49138.9 |
| luxr family transcriptional regulator | DW048_09620 | Not Available | Negative | 2179665 - 2180723 | 40597.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

