Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nlpc/p60 family protein | DW048_00640 | Not Available | Negative | 123096 - 123608 | 19478.6 |
| abc transporter atp-binding protein | DW048_00645 | Not Available | Negative | 123605 - 124312 | 26432.7 |
| thioredoxin-disulfide reductase | DW048_00660 | Not Available | Negative | 128670 - 129617 | 34005.6 |
| hypothetical protein | DW048_00665 | Not Available | Negative | 129687 - 130301 | 22975.4 |
| dna translocase ftsk | DW048_00670 | Not Available | Negative | 130318 - 132783 | 91840.0 |
| duf5063 domain-containing protein | DW048_00675 | Not Available | Positive | 132888 - 133451 | 21633.7 |
| 3'-5' exonuclease domain-containing protein 2 | DW048_00680 | Not Available | Positive | 133448 - 134098 | 24635.5 |
| class i sam-dependent rrna methyltransferase | DW048_00685 | Not Available | Positive | 134088 - 135272 | 44449.1 |
| autotransporter outer membrane beta-barrel domain-containing protein | DW048_00695 | Not Available | Negative | 136769 - 138007 | 47303.1 |
| sigma-70 family rna polymerase sigma factor | DW048_00700 | Not Available | Negative | 138004 - 138549 | 20808.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

