Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pasta domain-containing protein | DW048_08385 | Not Available | Positive | 1917684 - 1918325 | 23530.0 |
| rlua family pseudouridine synthase | DW048_08390 | Not Available | Positive | 1918344 - 1919417 | 40774.7 |
| d-alanine--d-alanine ligase | DW048_08395 | Not Available | Positive | 1919414 - 1920388 | 36067.1 |
| rhodanese-like domain-containing protein | DW048_08410 | Not Available | Positive | 1922311 - 1922709 | 15066.1 |
| gamma-glutamyl-phosphate reductase | DW048_08420 | Not Available | Negative | 1924038 - 1925291 | 45480.7 |
| glutamate 5-kinase | DW048_08425 | Not Available | Negative | 1925329 - 1926411 | 39536.0 |
| glycoside hydrolase family 92 protein | DW048_08435 | Not Available | Positive | 1927555 - 1929747 | 82170.1 |
| atp-binding protein | DW048_08440 | Not Available | Positive | 1930054 - 1931184 | 43707.8 |
| susd family outer membrane lipoprotein nanu | DW048_08450 | Not Available | Negative | 1931586 - 1933169 | 59567.2 |
| endonuclease | DW048_08465 | Not Available | Negative | 1938211 - 1939629 | 54013.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

