Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF41-8MH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF41-8MH AF41-8MH.Scaf230, whole
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system aminomethyltransferase gcvt | DW048_07550 | Not Available | Positive | 1727650 - 1728735 | 39655.6 |
| sodium:proton antiporter | DW048_07555 | Not Available | Positive | 1728941 - 1731208 | 84399.6 |
| hit family protein | DW048_07560 | Not Available | Positive | 1731233 - 1731658 | 16329.5 |
| rna-binding s4 domain-containing protein | DW048_07565 | Not Available | Negative | 1731749 - 1732177 | 16437.7 |
| aminoacyl-trna hydrolase | DW048_07570 | Not Available | Negative | 1732177 - 1732740 | 20618.0 |
| 50s ribosomal protein l25 | DW048_07575 | Not Available | Negative | 1732765 - 1733361 | 21429.4 |
| duf3276 family protein | DW048_07580 | Not Available | Negative | 1733542 - 1733925 | 14786.4 |
| transcription antitermination factor nusb | DW048_07585 | Not Available | Positive | 1734186 - 1735112 | 36291.4 |
| preprotein translocase subunit yajc | DW048_07590 | Not Available | Positive | 1735169 - 1735483 | 11609.3 |
| ybbr-like domain-containing protein | DW048_07595 | Not Available | Positive | 1735497 - 1736510 | 39038.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

